While I'm not familiar with that movement, most of the quartz watches that I've seen will stop running if the stem is pulled out to set the hands. But if you've already replaced the stem, it locks into the movement properly, and the battery checks out, then it's probably not an easy fix. You might try blowing out the movement with a can of compressed air, like the type used to clean electronics, like computers, keyboards, etc. From what I understand, fine hairs and dust can easily stop a quartz movement.
If it was running before you removed the stem, and you were careful when you removed it, I don't know what you could have done. But, as I said before, there's a lot going on in that watch. I know it's an expensive movement/watch. Best of luck.